Website Improvements; New Genome Data from RefSeq & Genbank; New Annotations via RAST.

Published on 2012-02-01

Improved Phylogenetic Tree Viewer:

Recent improvements to the phylogenetic tree viewer allow users to select their genomes of interest from the phylogenetic tree and save them as a genome group to their workspace.

Other Improvements and Bug Fixes:

  • This release also includes various minor improvements and bug fixes in some of the existing data and functionalities at PATRIC.
  • All of the tables on the PATRIC website now include mouse over feature which allows user to see full content of any cell in the table when the cell content is very long and is displayed only partially.

New genomes and annotations

Since November 2011, 105 new genomes have been added to PATRIC and 104 of them have been annotated using RAST.

A summary of the genomes available on the PATRIC website through February, 2012 is provided in the table below:

PATRIC

Legacy BRC

RefSeq

Number of genomes

3911

337

4014

Number of Complete genomes

1723

237

1711

Number of WGS genomes

2188

96

1906

Number of Plasmid only genomes

4

397