PATRIC January 2017 Release features 5938 new genomes and new AMR phenotype dataΒΆ

Published on 2017-01-31

New Genomes

In this release, PATRIC has added 5938 new genomes, bringing the total number of public genomes in PATRIC to over 94945. Total 571 of the new genomes were collected from published antimicrobial resistance studies, assembled from the reads available in SRA using PATRIC Assembly Service and then annotated using PATRIC Annotation Service.  The full list of available bacterial genomes can be accessed from the Genomes Tab for all bacteria.

New AMR Phenotype Data

In this release, we have incorporated curated AMR phenotype data for 1342 new genomes. The AMR panel data was collected from published AMR studies listed below.

Organism

Source

Genomes

Antibiotics

PMID

Acinetobacter baumannii

GenBank

26

19

Holt et al.

Acinetobacter baumannii

GenBank

35

11

25487793

Acinetobacter baumannii

GenBank

21

7

24277043

Acinetobacter baumannii

GenBank

268

1

27458211

Enterococcus faecium

SRA

132

1

27713836

Klebsiella pneumoniae

GenBank

16

14

26135860

Mycobacterium tuberculosis

SRA

138

1

25960343

Mycobacterium tuberculosis

SRA

123

4

27005572

Salmonella Typhimurium

GenBank

341

15

24030491