Return AMR Data for Drugs From PATRIC

p3-get-drug-genomes [options]

This script returns general anti-microbial resistance data given an input column of drug names. It supports standard filtering parameters and the specification of additional output columns if desired.


There are no positional parameters.

The standard input should contain drug names in the key column. You may specify the standard input using the options in Input Options.

Additional command-line options are those given in Data Options and Column Options plud the following


Show available fields.


Filter for genomes resistant to the incoming drug.


Filter for genoems susceptible to the incoming drug.