Return Signature Feature Data From Families in PATRIC


This script is a shortcut to create the input file for p3-signature-clusters from the output of p3-signature-families. It takes the signature-families output file and the list of relevant genomes (the --gs1 option from signature-families) and produces a file of feature data restricted to features in the families belonging to the specified genomes.


There are no positional parameters.

The standard input can be overriddn using the options in Input Options.

The additional command-line option is


Name of a tab-delimited file containing genome IDs in a column labelled genome.genome_id.