Model Reconstruction Service

Overview

The Model Reconstruction Service integrates and augments technologies for genome annotation, construction of gene-protein-reaction (GPR) associations, generation of biomass reactions, reaction network assembly, thermodynamic analysis of reaction reversibility, and model optimization, to generate draft genome-scale metabolic models. The service is capable of generating functioning draft metabolic models of an organism starting from an assembled genome sequence. Additional information is available in High-throughput generation, optimization and analysis of genome-scale metabolic models.

The Metabolic Reconstruction Service can be accessed from the Services Menu at the top of the PATRIC website page and via the PATRIC Command Line Interface (CLI).

Select a Genome

Select a public genome or a genome from workspace

Note: click the filter icon to the left of the genome input box to help in finding your genomes

Optional Parameters

Output Folder

The workspace folder where results will be placed.

Output Name

Name used to uniquely identify results.