Genomes Tab

Overview

The Genomes Tab provides a list of all the genomes and associated metadata in corresponding to the selected Taxon View level or for the user-defined Genome Group. From this page, genomes can be sorted, filtered, collected into groups, and downloaded.

Accessing the Genomes Tab on the PATRIC Website

Clicking the Genomes Tab in a Taxon View displays the Genome Table, listing of all of the genomes and associated metadata in corresponding to the selected Taxon View level or for the user-defined Genome Group.

../../_images/genomes_list.pngGenomes Table

The genomes in the table include associated metadata information regarding the organism, isolate, host, sequence, phenotype, project, and other. A complete description of the metadata fields is available in the Genome Metadata user guide.

Genomes Table Tools

Within this table you may do the following:

  • Download the entire contents of the table in text, CSV, or Excel format by clicking the Download button above the table on the left side.
  • Rearrange and narrow the list of genomes in the table via sorting (using column headers), keywords (using the Keyword box), and filtering (using the Filters tool).

Filter Tool

As with all tables in PATRIC, the Filters tool is available to narrow the display of the items in the table, show below:

../../_images/genomes_filter_panel.pngGenomes Filter Panel

Clicking on the Filters button at the top right of the table opens the Filter Panel above the table, displaying column names from the table and values for those columns with counts of occurence. Clicking on the filter values narrows the genomes displayed in the table to those matching the chosen filter values. Clicking the Hide button closes the Filter Panel. Clicking the Apply button removes the non-matching genomes and resets the scope in the Taxonomic View to only the genomes matching the filter criteria. More details are available in the Filter Tool user guide.

Action buttons

After selecting one or more of the genomes by clicking the checkbox beside the Genomes Name in the table, a set of options becomes available in the vertical green Action Bar on the right side of the table. These include

  • Hide: Toggles (hides) the right-hand side Details Pane.
  • Download: Downloads the selected items (rows).
  • Copy: Copies the selected items to the clipboard.
  • Genome: Loads the Genome View Overview page for the selected genome (if only one genome selected).
  • Genomes: Reloads the Genomes Table in the Genome List View, listing only the genomes that were selected.
  • Group: Opens a pop-up window to enable adding the selected genomes to an existing or new group in the private workspace.

More details are available in the Action Buttons user guide.